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Official Journal of the Human Genome Organisation

Table 2 Allelic and genotypic distribution of TNFRSF1B polymorphisms among different study groups in North Indian population

From: Association analysis of TNFRSF1B polymorphisms with type 2 diabetes and its related traits in North India

Polymorphism

 

Control

Patients

DPN

DPWN

DPH

DPWH

(CA) n

Allele

2n = 1,624

2n = 2,080

2n = 236

2n = 530

2n = 818

2n = 264

 

(CA)11

96 (5.9)

155 (7.4)

15 (6.4)

39 (7.3)

62 (7.7)

16 (6.1)

 

(CA)12

14 (0.9)

27 (1.3)

1 (0.4)

3 (0.6)

10 (1.2)

2 (0.7)

 

(CA)13

304 (18.7)

390 (18.8)

41 (17.4)

99 (18.7)

164 (20.0)

46 (17.4)

 

(CA)14

41 (2.5)

41 (2.0)

9 (3.8)

7 (1.3)

15 (1.8)

8 (3.0)

 

(CA)15

885 (54.5)

1,129 (54.3)

128 (54.2)

301 (56.8)

436 (53.3)

147 (55.7)

 

(CA)16

270 (16.6)

314 (15.1)

42 (17.8)

79 (14.9)

125 (15.3)

44 (16.7)

 

(CA)17

14 (0.9)

24 (1.1)

0 (0.0)

2 (0.4)

6 (0.7)

1 (0.4)

 

OR (95% CI)*

1.01 (0.88–1.15)

0.90 (0.66–1.23)

0.90 (0.68–1.19)

 

P value

0.92

0.56

0.51

rs1061622

MAF, G

25.6

27.7

26.4

26.0

28.0

25.4

 

Genotype

n = 812

n = 1,026

n = 106

n = 265

n = 409

n = 130

 

GG

47 (5.8)

76 (7.4)

4 (3.8)

19 (7.2)

33 (8.1)

8 (6.1)

 

GT

321 (39.5)

417 (40.6)

48 (45.3)

100 (37.7)

163 (39.8)

50 (38.5)

 

TT

444 (54.7)

533 (51.9)

54 (50.9)

146 (55.1)

213 (52.1)

72 (55.4)

 

OR (95% CI)**

1.12 (0.93–1.34)

1.18 (0.75–1.85)

1.14 (0.77–1.70)

 

P value

0.25

0.54

0.58

rs3397

MAF, T

42.3

41.3

38.6

40.0

41.4

39.7

 

Genotype

n = 813

n = 1,030

n = 110

n = 265

n = 412

n = 131

 

TT

138 (17.0)

167 (16.2)

10 (9.1)

43 (16.2)

66 (16.0)

19 (14.5)

 

CT

412 (50.7)

516 (50.1)

65 (59.1)

126 (47.6)

209 (50.7)

66 (50.4)

 

CC

263 (32.3)

347 (33.7)

35 (31.8)

96 (36.2)

137 (33.3)

46 (35.1)

 

OR (95% CI)**

1.06 (0.87–1.29)

1.22 (0.75–1.95)

1.09 (0.72–1.64)

 

P value

0.61

0.49

0.77

  1. n and 2n represents the number of individuals and alleles, respectively
  2. DPN, Diabetic patients with neuropathy; DPWN, Diabetic patients without neuropathy; DPH, Diabetic patients with hypertension; DPWH, Diabetic patients without hypertension
  3. In allele section data are number of alleles (%) and in genotype section data are number of individuals with given genotype (%)
  4. P values presented are uncorrected for multiple testing (Bonferroni adjusted P = 0.003)
  5. * Odds ratio (95% confidence interval) of common allele compared with other alleles
  6. ** Odds ratio (95% confidence interval) of homozygotes of common allele compared with all other genotypes