A genome wide pattern of population structure and admixture in peninsular Malaysia Malays

The HUGO Journal

Official Journal of the Human Genome Organisation

Table 2 Proportion of membership coefficient ( Q ) for each of population in each of the six inferred clusters ( K = 6)

Country & Ethnicity (Sample size)	Location/State	Population ID	Clusters ( K = 6)
Country & Ethnicity (Sample size)	Location/State	Population ID	Malays	Proto-Malays	*Semang*	Chinese	Indians	African
Malaysia:
Malays*:
Jawa (19)	Johor	MY-JV	0.419	0.004	0.010	0.665	0.004	0.001
Bugis (14)	Johor	MY-BG	0.255	0.027	0.044	0.561	0.008	0.001
Minang (20)	Negeri Sembilan	MY-MN	0.318	0.011	0.019	0.525	0.125	0.002
Kelantan (18)	Kelantan	MY-KN	0.222	0.018	0.054	0.542	0.162	0.002
Kedah (24)	Kedah	MY-KD	0.206	0.028	0.031	0.527	0.208	0.001
Proto-Malay^a:
Temuan (49)	Negeri Sembilan	MY-TM	0.101	0.361	0.053	0.478	0.006	0.001
Negritos^a:
Jahai (50)	Perak	MY-JH	0.012	0.010	0.808	0.168	0.002	0.000
Kensui (30)	Kedah	MY-KS	0.018	0.006	0.926	0.035	0.015	0.001
Thailand*:
Pattani (14)	Pattani	TH-PT	0.237	0.013	0.039	0.570	0.140	0.001
Indonesia^a:
Jawa (19)	Java	ID-JV	0.251	0.029	0.048	0.663	0.008	0.001
Melayu (12)	Sumatera	ID-ML	0.378	0.005	0.018	0.586	0.012	0.001
Toraja (20)	Sulawesi	ID-TR	0.444	0.004	0.009	0.540	0.003	0.001
China^a:
Jinuo (29)	Yunnan	CN-JN	0.016	0.005	0.015	0.959	0.005	0.001
Wa (56)	Yunnan	CN-WA	0.032	0.005	0.021	0.936	0.005	0.001
India^a:
Marathi (14)	Maharashtra	IN-WL	0.002	0.003	0.006	0.006	0.979	0.004
Telugu (24)	Andra Pradesh	IN-DR	0.003	0.003	0.011	0.006	0.975	0.002
Africa^b:
Yoruba (60)	Nigeria	YRI	0.001	0.001	0.003	0.001	0.002	0.992

^aThe genotype data obtained from the database of PASNPI Consortium (http://www4a.biotec.or.th/PASNP/).
^bThe genotype data obtained from International HapMap Consortium (http://hapmap.ncbi.nlm.nih.gov/).
*The inclusion criteria are; the sampled individual of a population must be at least three generations of the same population, no parental admixture and communicate daily in the local dialect. The exclusion criteria are those that contradict the inclusion criteria.