Official Journal of the Human Genome Organisation
Table 5 Summary of nsSNPs that were predicted to have functional significance by UTR scan algorithm
Gene name | SNP ID | Nucleotide change | UTR position | Functional element change |
|---|---|---|---|---|
KCNQ1 | rs45579540 | C → T | 3′ UTR | 15-LOX-DICE |
rs45570140 | A → C | 3′ UTR | 15-LOX-DICE | |
rs45510192 | A → G | 3′ UTR | 15-LOX-DICE | |
rs45477500 | A → G | 3′ UTR | 15-LOX-DICE | |
rs45460605 | C → T | 3′ UTR | 15-LOX-DICE | |
rs3889377 | A → G | 5′ UTR | 15-LOX-DICE | |
rs2519184 | A → G | 3′ UTR | 15-LOX-DICE | |
rs422976 | C → G | 3′ UTR | 15-LOX-DICE | |
rs8234 | A → G | 3′ UTR | 15-LOX-DICE | |
rs45504094 | A → G | 5′ UTR | IRES | |
rs8178998 | A → C | 5′ UTR | IRES | |
rs3889377 | A → G | 5′ UTR | ADH_DRE | |
rs10798 | A → G | 3′ UTR | GY-Box | |
rs8234 | A → G | 3′ UTR | GY-Box | |
KCNH2 | rs41314396 | C → T | 5′ UTR | 15-LOX-DICE |
rs41314393 | A → G | 5′ UTR | 15-LOX-DICE | |
rs41314363 | A → G | 3′ UTR | 15-LOX-DICE | |
rs41311012 | C → T | 5′ UTR | 15-LOX-DICE | |
rs41307289 | A → G | 3′ UTR | 15-LOX-DICE | |
rs41314396 | C → T | 5′ UTR | IRES | |
rs41314393 | A → G | 5′ UTR | IRES | |
SCN5A | rs45593136 | A → G | 3′ UTR | CPE |
rs45601739 | A → G | 5′ UTR | 15-LOX-DICE | |
rs45589543 | C → T | 3′ UTR | 15-LOX-DICE | |
rs45548632 | C → T | 3′ UTR | 15-LOX-DICE | |
rs45512996 | A → G | 3′ UTR | 15-LOX-DICE | |
rs45503498 | C → G | 3′ UTR | 15-LOX-DICE | |
rs45502198 | A → G | 3′ UTR | 15-LOX-DICE | |
rs45474195 | A → G | 3′ UTR | 15-LOX-DICE | |
rs45441103 | A → G | 3′ UTR | 15-LOX-DICE | |
rs41315491 | C → T | 3′ UTR | 15-LOX-DICE | |
rs45601739 | A → G | 5′ UTR | IRES | |
KCNE1 | rs41315471 | C → T | 5′ UTR | 15-LOX-DICE |
rs41315349 | C → T | 5′ UTR | 15-LOX-DICE | |
rs41314803 | G → T | 3′ UTR | 15-LOX-DICE | |
rs41314793 | C → T | 3′ UTR | 15-LOX-DICE | |
rs41312995 | C → T | 3′ UTR | 15-LOX-DICE | |
rs41312993 | A → G | 3′ UTR | 15-LOX-DICE | |
rs41312367 | A → G | 3′ UTR | 15-LOX-DICE | |
rs41315473 | A → G | 5′ UTR | TOP | |
rs41315471 | C → T | 5′ UTR | IRES | |
rs41315349 | C → T | 5′ UTR | K-Box | |
rs41314819 | A → G | 5′ UTR | Brd-Box | |
KCNE2 | rs41260744 | A → G | 5′ UTR | 15-LOX-DICE |