Skip to main content

Official Journal of the Human Genome Organisation

The HUGO Journal Cover Image

Table 5 List of 54 SNPs in 43 genes, along with the corresponding correlation coefficient between minor allele frequency and antibody response, that showed significant association with antibody response in half-sample 1

From: Genetic determinants of immune-response to a polysaccharide vaccine for typhoid

Chromosome no. Gene SNP rs # Corr. coeff. (r) Chromosome no. Gene SNP rs # Corr. coeff. (r)
1 TNFRSF8 12736809 −0.94 4 IRF2 12512614 −0.96
1 TNFRSF1B 505844 −0.97 6 BAT2 2736172 −0.91
1 IL12RB2 7555183 −0.99 6 HLA-DOB 2859579 −0.99
1 TGFBR3 1017956 −0.94 6 IL22RA2 13197049 0.92
1 XCL1 6700487 0.91 6 CCR6 1571878 −0.96
1 PTGS2 2745557 0.93 8 DEFB1 2978873 0.98
1 IRF6 2073486 −0.93 8 DEFB1 2977772 0.91
1 NLRP3 12565738 −0.92 8 IKBKB 3747811 −0.95
1 NLRP3 10754558 0.98 9 PAX5 7031673 −0.91
2 IL1R2 13022757 −0.93 10 IL2RA 10905668 0.98
2 IL1R2 4850993 −0.95 10 ITGB1 10827164 −0.95
2 IL1R2 3218848 0.98 10 CXCL12 10900030 0.96
2 IL1R2 2110562 −0.92 10 MAPK8 12358297 −0.95
2 IL1RL1 10208293 0.95 10 CHUK 2230804 −0.91
2 IL18R1 1362348 0.92 11 CD59 3181274 −0.94
2 CTLA4 231779 −0.99 11 CD44 112762 −0.97
3 IL5RA 2290610 −0.98 11 IL10RA 4252306 0.93
3 CMTM8 4132830 −0.96 11 TIRAP 8177352 0.98
3 CMTM7 17029530 −0.97 13 IL17D 1888001 0.94
3 CD80 491407 −1.00 13 TNFRSF19 7338328 −0.98
3 CD80 2228017 −0.97 16 IL4R 4787423 0.96
3 CD80 2222631 −0.93 17 CSF3 2227321 −0.95
3 CD80 16829988 −0.99 17 MAP2K6 12946388 −0.95
3 CD86 2681411 0.97 21 ITGB2 235326 0.99
3 CD86 17203439 0.95 22 MAPK1 743409 −0.93
4 TLR1 5743572 0.93 22 MAPK1 2283792 −0.98
4 CXCL13 171388 −0.94 22 MAPK1 3788332 −0.94